Codoncode aligner manual
- #Codoncode aligner manual how to#
- #Codoncode aligner manual for mac os x#
- #Codoncode aligner manual license key#
- #Codoncode aligner manual mac os x#
msi format does not support installers for both 32-bit and 64-bit Windows.įor installers of older versions, please contact CodonCode Corporation. msi format are not available anymore, since the. Installers for the License Server for CodonCode Aligner are available (for example because your projects are large), you will need to do so again. Previously changed the memory available to Aligner The memory available to CodonCode Aligner to the default value. Please note that updating CodonCode Aligner to the current version will reset Install the new version at the same location as the previous version (typically.Download the installer for CodonCode Aligner 10.0.2 using the links above.Quit CodonCode Aligner if Aligner is running.
#Codoncode aligner manual mac os x#
Updating to CodonCode Aligner 10.0.2 on Mac OS X (10.10 and newer) If nothing happens after double-clicking on the "Check for updates" icon, download and use the installer Note: This may not work for users of version 10.0.1. CodonCode Aligner 4.2.1 released by Peter Richterich » Tue 8:05 pm 0 Replies 17845 Views Last post by Peter Richterich Tue 8:05 pm CodonCode Aligner 4.1.1 released by Peter Richterich » Fri 5:17 pm 0 Replies 17776 Views Last post by Peter Richterich Fri 5:17 pm CodonCode Aligner 4.0. Follow the instructions on the screen to download and install the update to the newest version.Double-click the "Check for updates" icon.
Navigate to the folder where CodonCode Aligner is installed (usually in a folder called "CodonCode Aligner" in "C:\Program Files\").Updating to CodonCode Aligner 10.0.2 on Windows
#Codoncode aligner manual license key#
If you are upgrading from CodonCode Aligner version 9 or older, please note that you will need a new license key after upgrading, and that this may not be a free upgrade for you. To update older versions to version 10.0.2, please follow the instructions below. Projects, and try out many functions, but not to save or print if your project contain contigs. The demo version also lets you open existing Aligner Save projects, as long as your projects contain only unassembled samples. You can view and print traces, edit traces, and The demo version is a fully functional trace viewer and editor. exe files, you can download Aligner_Installer.zip (a ZIP archive that contains the installer for Windows).Īfter downloading, double-click Aligner_Installer.exe to start the installation, and follow the instructions on the screen.įirst time users automatically receive a fully functional free 30-day trial.Īfter 30 days, the program converts to the demo version.
#Codoncode aligner manual for mac os x#
Download CodonCode Aligner 10.0.2 for Mac OS X (81 MB).More about the Phred parameter file.35Ībout Phred.36Įnd Clipping.38Įnd Clipping Parameters. Problem running the workstation version of Phred.35 Problems reading the Phred parameter file.34 Missing entries in the Phred parameter file.33 What Aligner does.30Įditing the PHRED parameter file.30īase calling problems.32Ĭannot find base calling program.32
#Codoncode aligner manual how to#
How to call bases with PHRED from Aligner.29 Removing Samples from an Aligner Project.28īase Calling with PHRED.29 Organizing Samples And Contigs In Folders.26Ĭreating Folders.26 CodonCode Aligner introduced several features and improvements like building Neighbor-Joining trees, zooming in the contig view, shortening reference sequences after alignments, masking contig bases in low coverage regions, the percentange consensus.
Tags in Phrap assemblies.22Ĭompatible File Formats.22 Aligner - Clear Aligner - Sentence Aligner - Paragraph Aligner. Importing Sequencher Projects (CAF Files).20
Opening Single Sample Files.18Īdding Several Sample Files.18Īdding Entire Folders of Sample Files.19Īdding Entire Assemblies.20 Saving Projects.17Ĭlosing Projects.17Īdding Sample Files to Aligner Projects.18 Working with Aligner Projects.16Ĭreating New Projects.16 Viewing qualities.13Īdditional Reading.14Īligner Projects.15 Where quality values come from.12Īrtificial qualities.13 Quality View Window.10Ĭontig View Window.10 License Server Licenses.5įirewall ports for License Server use.6ĬodonCode Aligner Features.7Īligner Windows and Views.7 Using Phred and Phrap from CodonCode Aligner.4 Licenses for CodonCode Aligner.3ĭemo Mode.3